rs28132258 SNP Detail

Summary

• ID
  rs28132258
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107602345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAATCTTA AGGCCTTGAG
  TGAGAATCTA AACGACACAG ACTTTGAGAT CTTTGGCAAA CTGGGATATT CCTAGGCTCC
  ACGAGTAGTT GTGCCTCATG GCGACATTAA ACTGAAGGTC TCACTTGCCT TGTCCACAGA
  GTCTGAAAAG CCACCGTGCA AACCGGTGTC AGGCAGCCCT CACAGCCTGA ACGGTGGCAT
  Y
  GGTCAGCTGT CTCCCTGAGA GACTGCAGTG GAGGCTTCCC CAGCCCCGCA GGCACATCTT
  AAGGAGAGCA GAGCTGCTGT CTTTGTTTGG CATTGTTCAA TGTCAGCAGT AGAGAAGCAA
  AATCAGCCCG GAGGGCTGTT TAATTGCAAT TGGGGGGAAA AATCATGCTT TTTCAAGGGA
  GAAAAGGAGA GTTCTCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss38283578	NES09507612	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T	T		C	T	C
ss321250745	CHEV_4_107417753	CHEVERUD	SCREENING_POP	f	SNP									C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs28132258					SNP	T	T	C	T	C	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283578	NES09507612	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107602345 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	864 bp downstream
Rr597058	regulatory region 597058	within coordinates