rs28132254 SNP Detail

Summary

• ID
  rs28132254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107602771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGCTGAT TCGGTCTCAT
  TCAGATCTAA GCAAGCACAT TCATCATTCC GAGAAGTGCC ACTTAAGCGA CTGCCTTGCC
  TCAAGTGTTC CCAAGCACAA TTAGGCATGG TGCAAGCTAC TGACCCCCAG AGAGCAAGCA
  CCAAGGGGAG ATGCACCCCT TATGGCCCTG GAAAATGCTG CCTGGCTCCT CATGTCTCCC
  Y
  GGGGGCAGAA GGAAAGTCAA TAGGCGCTGA AGACCAAGTC AGAGATTCTG GAGCCTGGCT
  CCCTCTCTAA AAGCAGCCCA GCTGGACGGG GGACAGCTGA AACTGCCCTG TTCTTCTGTT
  GCTGCCACCT CTCCTAAGTC CTCGAGGCTT TATTTACTGG CCAAGATTCG GTCTGTGTCT
  TTCACTGTTC AACAAATTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38283574	NES09507618	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T		C	T	T		T
ss321250750	CHEV_4_107418179	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28132254					SNP	T	T	T	T	T	C	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38283574	NES09507618	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107602771 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	1290 bp downstream
Rr597058	regulatory region 597058	within coordinates