rs28131928 SNP Detail

Summary

• ID
  rs28131928
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109325140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATAGCCCT GGCTGCCTGG
  AATTCACAAG GATCTCTGTC TCCCAAGTGC TGGGAGTAAA GCTATGTGTC ACCATGTCTA
  GCCTTTCAAC TACTTGAATT TGAGTTCTAG ATTATACATG GTAGTTAAGA GAACTTCTAC
  AAGTTATCTT GACTTCCACA TGTGCACTGT GGCATGTGCC ACCTCCTCCC AAATGTAAAA
  K
  AAATCAATAA TGATCCAGTC ATTCCCAAGA ACATGTATAG TAATAAAGTA CTTCAAATGT
  TTAATGGTAC ATCAATGGCA GCTTAGCAGT ATAGTGTTTG CCTGACACTC AAAGCCCTAG
  GATTCAATCC TAGGTACCAC AAAACAACAA ATATTTGATG CATTAAATAC ATATTATTTA
  AAATAGCAAA AGATAAAAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38277549	NES09516025	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28131928					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277549	NES09516025	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109325140 () rs orientation: forward

Symbol	Name	Function Class
Rnf11	ring finger protein 11	Intron
Rr597331	regulatory region 597331	within coordinates