rs28131892 SNP Detail

Summary

• ID
  rs28131892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109360490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGCAGGC CTAGAGCTGA
  GGCAGACTGA CGTCTCACAC AATAAGCAAC TTTATTTAGA GCATCAGACA ATTTTATACT
  CTGAGGGTTA AGGAGTGTCA CCTGAGAAAA GTGTCAATTA CAAGAACAAG ACCCTTGTGG
  CAAAAACATG TTTTTCCAAA AAGGCTTATG AATAACAGCT GAAGTAAACA TACTCCTGTC
  Y
  GATACACCAG GGAGAGGCAT GAAAACCCAT TCCAAGAACA ATTCTGTATT TTTGAAGAAA
  CTGAGGCCAC AGGACTGTTG TCTTGTTTTC TTGCAGTTTT CTCACAAGTA TTCTTAATTC
  TCACATGATT CCATTCTTGG ACTGTGCTCT GACAGTTTAC TAACTAGAGG CAAATAGTAC
  TTTACCCACA ATGTCTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38277513	NES09514022	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28131892					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277513	NES09514022	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109360490 () rs orientation: forward

Symbol	Name	Function Class
Rr398390	regulatory region 398390	1666 bp upstream
Rr597337	regulatory region 597337	1672 bp proximal
Rr597338	regulatory region 597338	1769 bp proximal
Rr597339	regulatory region 597339	1832 bp proximal