rs28131891 SNP Detail

Summary

• ID
  rs28131891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109361174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCCCTAA ACTCTCACAG
  GCTAGGAGAC TTGGAACTTT ATAGTAATTA AAATCTTGGG CTAAGGAAAT GGCTAATTGG
  GTAAGTGTAC TTTGCTATTC AAGCTCAGTG TCCTAAAAGC CTGACATGGT GGGCCCTGTC
  TATTATCATA GAACTACTAT AGCAAGATAA GAGGCTGAGA CTGGAGAAAC CCCTAGAAAC
  Y
  TGTGGGCCAG CTACACTGTA GTACACAGTA TAGGGACAAA CGAGAGGGAA CAACCAAAGT
  AAAGGGTGAC GACCATCACT GAGGGTGTTC TCTGACTCCA CACAAACGCT GTGAGAGTGT
  GCAGCTGCAC ACACATGCAC ACACACAGCA CAACACATTA ATAACAAAAT TACATTCTTA
  ATGAATAATT ATGACCAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38277512	NES09514023	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	C	C		T	C	C	T		T
ss321254141	CHEV_4_109176582	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28131891					SNP	C	C	T	C	C	C	T	C	C	C	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277512	NES09514023	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109361174 () rs orientation: forward

Symbol	Name	Function Class
4930522H14Rik	RIKEN cDNA 4930522H14 gene	1360 bp downstream
Rr398390	regulatory region 398390	982 bp upstream
Rr597337	regulatory region 597337	988 bp proximal
Rr597338	regulatory region 597338	1085 bp proximal
Rr597339	regulatory region 597339	1148 bp proximal