rs28131890 SNP Detail

Summary

• ID
  rs28131890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109362160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCAGTCC AGCCAGGGCA
  ACACAGTAAG ATCTATCTCA AAACAAAAGC AAACCAAAAA TTCATATTTA TTTACTTTTA
  ATAGAGAAAT TAAAACTTTG TAGTCTAGGC TGACTTGGAA CTCATCATGT AGCCCAGACT
  AGCCTCAGAC CCATGGTGAT GCTCCTGCCT CAGCTTCTGA ATTACAGACG TGTACCTGCT
  R
  CACACCTCGC TATGTTTTCT TTTTAAACAA GAAAGTATGA GTGTAAAGAT CCAAAGAAAT
  GCTTCTGTGA GTTGTCAAAA GACTGCGGTT TATCTGCTGT CACCTACAGA GGGAGCCCTT
  GCTACAAACC TAAAATTGTC CCTACAGACT TGAACATTGA GCCCGCCAAT AGGAGGAGCC
  AAGAAACGGA TCAGAAAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38277511	NES09513889	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28131890					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277511	NES09513889	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109362160 () rs orientation: forward

Symbol	Name	Function Class
4930522H14Rik	RIKEN cDNA 4930522H14 gene	374 bp downstream
Rr398390	regulatory region 398390	within coordinates
Rr597337	regulatory region 597337	2 bp proximal
Rr597338	regulatory region 597338	99 bp proximal
Rr597339	regulatory region 597339	162 bp proximal