rs28131889 SNP Detail

Summary

• ID
  rs28131889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109362384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACAAGAA AGTATGAGTG
  TAAAGATCCA AAGAAATGCT TCTGTGAGTT GTCAAAAGAC TGCGGTTTAT CTGCTGTCAC
  CTACAGAGGG AGCCCTTGCT ACAAACCTAA AATTGTCCCT ACAGACTTGA ACATTGAGCC
  CGCCAATAGG AGGAGCCAAG AAACGGATCA GAAAGGCTTA AGTGTTAGGT GAGTTGGTTT
  Y
  ACATTGTGTT GGGAATCACA CAGACATACA TGGAGGCAAG ACACCAGTTC TCATAAAATG
  AGAATAAATA AATAAGTTAA AATAAATATA TAATGCCCAG TAAGGGCTAG AGCTACTTTA
  TAATAAAGAA CAAGAAAAGC AATATTATTA GTACAGACAT GATAAGAGAC TCAGAAGTTC
  ATAATTCAGT TTTAACTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38277510	NES09513890	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28131889					SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277510	NES09513890	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109362384 () rs orientation: forward

Symbol	Name	Function Class
4930522H14Rik	RIKEN cDNA 4930522H14 gene	150 bp downstream
Rr398390	regulatory region 398390	within coordinates
Rr597337	regulatory region 597337	within coordinates
Rr597338	regulatory region 597338	104 bp distal
Rr597339	regulatory region 597339	41 bp distal