rs28131234 SNP Detail

Summary

• ID
  rs28131234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:99122155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGTCGTG AAAATAAAAT
  AGTTGGAACC ATATTAGGGA AAGTCCAGTT AAACTGCTTG TATTGGGTAG TGCTGGAGAG
  ATCTACTTTA GTTAGCTCAG ACTCCATTAA TTAAAAGAAG TATTAGCTAA GCACTTTGTA
  CAGGTCAGGG TTTGGTGCAT GACTGCTGGC GTGCTGGTCG ACTGTAACAC AGAGCTGGCC
  Y
  GCTCAGAAGG TATGTCCTTT GCAGAGCCCC CATGGGTGAG TTCTTCCCTG CCTTATCTCA
  TGTTCTTTAT GGGAATGAAC ATTAGAAAAG AAAGTCGGAA GAAAATTTGA TTATGGGCCA
  ATAATTTTAC ACTCAGGAGG CAGAGGCTGG TGGGTTCCTG TGAGTGTGAG GCCAACTTGG
  TCTACATTGC CAAGTCTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38240377	NES09548129	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	T		C
ss321223493	CHEV_4_98900609	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28131234					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38240377	NES09548129	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:99122155 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg4c	autophagy related 4C, cysteine peptidase			Intron
				Noncoding-Transcript-Variant
Rr595849	regulatory region 595849			580 bp proximal
Rr595850	regulatory region 595850			1375 bp proximal
Rr595851	regulatory region 595851			1469 bp proximal