rs28129971 SNP Detail

Summary

• ID
  rs28129971
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98886984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAAGACA CATAAAAACG
  TAAGTTAAGA TGAAAGAAAT AATTTTAAAA TCCAAGTTTG GACACACAAC TATTGGATTT
  AGCACAGTGG AGAACAACTG TAATTTTAAC AAGTGCAGTT TGGATGGGAG ATAGCAGGAA
  AGCTAAGTTT AAAAGACAGC AAGAGTAAAA GAACTGAAGA TACAAGGTTT ACAAAGTAAA
  M
  GAACCAAGAC ACAAAGTATA ATGGGCTCTA CTTTAAGAGA CAGCAGAGCT GGCATGATGG
  CACATTCCTT TAATCCCAGC ACTGGTTCTA GGATACACTC CCTCCCCCAC CCCCACCCCC
  CAATATCAGA AAATAGTGTA CAAAGTAGCA GCATGAACAC CAGGGAGAAT TTCTAAAGTG
  AGAACTAACA TGTCTGTCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38241321	NES09547132	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28129971					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38241321	NES09547132	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98886984 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dock7	dedicator of cytokinesis 7			Intron
				Noncoding-Transcript-Variant
Rr595814	regulatory region 595814			1892 bp proximal
Tssr42518	transcription start site region 42518			1228 bp downstream