rs28129970 SNP Detail

Summary

• ID
  rs28129970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98887132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAAGACA GCAAGAGTAA
  AAGAACTGAA GATACAAGGT TTACAAAGTA AACGAACCAA GACACAAAGT ATAATGGGCT
  CTACTTTAAG AGACAGCAGA GCTGGCATGA TGGCACATTC CTTTAATCCC AGCACTGGTT
  CTAGGATACA CTCCCTCCCC CACCCCCACC CCCCAATATC AGAAAATAGT GTACAAAGTA
  R
  CAGCATGAAC ACCAGGGAGA ATTTCTAAAG TGAGAACTAA CATGTCTGTC TGTCTGTCTA
  TCTGTCTGTC TGTCTGTCTG TGAATGAAAA TGATTCAGTA TATAGGAGGG AACTGATCAT
  TCAGGACAAG AGATCAAAGA ACTCCTAGAG TGGGAATCCT GAGTAGGCGG AAAAAAGGAG
  GAGACTCACA GACAAGCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38241320	NES09547133	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28129970					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38241320	NES09547133	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98887132 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dock7	dedicator of cytokinesis 7			Intron
				Noncoding-Transcript-Variant
Rr595814	regulatory region 595814			1744 bp proximal
Tssr42518	transcription start site region 42518			1080 bp downstream