rs28129968 SNP Detail

Summary

• ID
  rs28129968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98888216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACCAATTT TTCAATGAAA
  ATGAAAAATG TAAAACTACT TAAAATAAAG CTTAATTAGA TCTCAGTTGG CAGCACATAC
  CTGTTATCAC AGCACATGGG AGGCTGAAGC AAGAGGACCA GGAGTTCAAA GCTACCCTGG
  GCTACATAAT GAGACAGTGT CTCAAAGAAA GAAAACTTAA TTAAGACATG CTGTGATGAC
  R
  TAAAAAAAAA AAAAAAGAAA TTAGTATAAA CACCTACATA TACACGTGTA TACTAATTTC
  ATATATATTT GGACAAGTTG TTACTATGTT TCACTTAGTG ATTTTCTTAA AAAGCAAAAT
  GAATACCAAT TAATATAGAC TTCCTTATTC TAAATCTTTG TTATATAAGA AATATAAAAA
  GAATAATTGT TAAACAAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss38241318	NES09547052	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	A		A	G	A		G	G
ss45588615	mCV22737751	ABI	CRAMUS_MOUSE	f	SNP	G	A				A
ss147093389	ENSMUSSNP786994	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss321222462	CHEV_4_98666670	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs28129968					SNP	G	A	A	G	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38241318	NES09547052	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98888216 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dock7	dedicator of cytokinesis 7			Intron
				Noncoding-Transcript-Variant
Rr595814	regulatory region 595814			660 bp proximal
Tssr42518	transcription start site region 42518			within coordinates