rs28129534 SNP Detail

Summary

• ID
  rs28129534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107423942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGGCCTC TTGTCTCACA
  GATAAGGAAG CAGATCCAGA CAAGGCGTGC TCATCAGGCT CTGATCGAAT AGCCAGAGCT
  CCAGTTCCTG TAGCTACTGG CAAGGTATTT CTGCCAGCAT CACCCTCCAT ATCTCTCCCA
  TTTTCAGTCT TCTGGTAGCT CTGGTATTCC TACCTCCATC TTACCTTGTC ACCGTCCACA
  R
  TGGTGCACAG GTCTGTGCAG GAGTTCCGGT CTCCTGTTGG ACAGTTGAAG GGTTCTCTTC
  CGTGGTAAAG ATGGCTTCTG TGCCAGCCCA CCCTGCCATT CTGCCACTTT CACCATTGAT
  GGGGATAGAG ACCCCAAACT TGCCCAGAAT GAAGCGATTT GCCCCAGTTT GCCCATCTAG
  AACAGAGCTG ACCCCGACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38284553	NES09515824	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28129534					SNP	G	G	A	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38284553	NES09515824	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107423942 () rs orientation: forward

Symbol	Name	Function Class
Glis1	GLIS family zinc finger 1	Intron
Rr597017	regulatory region 597017	1578 bp proximal