rs28129532 SNP Detail

Summary

• ID
  rs28129532
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107424382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTAGCTT CCCACACACC
  TGAGCTCAGA ATTCTGGGCC ATCCTGCCAA GAATCTTGTC CCCTTGCTGT GACCGTGCCT
  CAGGCTCCTA CCCAGTCACA CCAACTCTTG GAGGACAAGC TGAGGAGGGC CAGATGTCAC
  TAAATGAAGG AAAGAGTGTA GACATTAAAA AGCTAAGGGG CGTGTAAGAA GAATTTAAAC
  Y
  CCACTGGACC TGAAGACGCC TGTGGCCTTT TGCCCACAGA AATCACTTGA GGGTCAGTGG
  AGAGGGTCAA GACTGACTCC AGGGAAGCTA GAGAGGCCAG CAAGATGGTG ACAGGAGCAA
  GGGTGACTGG GGTCTGGCCA AGGGCTGTGT CCTTCCCGGG TTCCTCATCC ATGCCTCCTG
  CCTCCTCTGC CTCCTGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38284551	NES09515668	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T		C	T	T	T
ss321249101	CHEV_4_107239790	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28129532					SNP	T	T	T	T	T	C	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38284551	NES09515668	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107424382 () rs orientation: forward

Symbol	Name	Function Class
Glis1	GLIS family zinc finger 1	Intron
Rr597017	regulatory region 597017	1138 bp proximal