rs28129531 SNP Detail

Summary

• ID
  rs28129531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107424399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGAGCTC AGAATTCTGG
  GCCATCCTGC CAAGAATCTT GTCCCCTTGC TGTGACCGTG CCTCAGGCTC CTACCCAGTC
  ACACCAACTC TTGGAGGACA AGCTGAGGAG GGCCAGATGT CACTAAATGA AGGAAAGAGT
  GTAGACATTA AAAAGCTAAG GGGCGTGTAA GAAGAATTTA AACTCCACTG GACCTGAAGA
  Y
  GCCTGTGGCC TTTTGCCCAC AGAAATCACT TGAGGGTCAG TGGAGAGGGT CAAGACTGAC
  TCCAGGGAAG CTAGAGAGGC CAGCAAGATG GTGACAGGAG CAAGGGTGAC TGGGGTCTGG
  CCAAGGGCTG TGTCCTTCCC GGGTTCCTCA TCCATGCCTC CTGCCTCCTC TGCCTCCTGC
  CTCCTCGGCT GGCTACATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38284550	NES09515669	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28129531					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38284550	NES09515669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107424399 () rs orientation: forward

Symbol	Name	Function Class
Glis1	GLIS family zinc finger 1	Intron
Rr597017	regulatory region 597017	1121 bp proximal