rs28129526 SNP Detail

Summary

• ID
  rs28129526
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107425026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAGGCTA CGTTTGTGAA
  CGGCAGCCTC CCAGCCGCTC AGCACATCAA GCAAGAAGCC CTACCGGACT ACCAGGCCAT
  GGTCAGCGCC CACACACCCC TGCCCACCCA CTGCCGAGCC CCATCGTCCA TGGGTCTGCC
  CTCAGACCTG GACTTTCCAG ACCGAGGCCT CACCAACCCT GCACCTTCCT GCTACCTTCT
  K
  GGCAATGAAC CCATCTCAGA CCTGGGTCCC CAACCCGAGG CCCACCTCCC CGAGGGCAGC
  CTGAAACGCT GCTGCCTCCT GGGCCTGCCC CCCACCTCTT CAGCCTCCTC CTCACCCTGT
  GCCTCCTCAG ATATCAATCC TGTCATCCAC TCCTCCCAGA CAGCTCTAGT TAGCTGTGTA
  AATGGACTCC GAAGCCCACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38284545	NES09515674	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28129526					SNP	G	G	T	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38284545	NES09515674	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107425026 () rs orientation: forward

Symbol	Name	Function Class
Glis1	GLIS family zinc finger 1	Coding-Synonymous
Rr597017	regulatory region 597017	494 bp proximal