rs28129518 SNP Detail

Summary

• ID
  rs28129518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107426160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAAGAAG CCTGGCGAGA
  CTTGCCTTTT CCATGTCACC GGATGGTGGT GGCAGGTGAG GAGTGTGCCC TCCTCCGGCA
  CTGGCCTTTA CACAGTGTAC TTCCAAGACA GGTTCCTGGG CTTTCTGAGC CTCCCAGTGT
  TGGCTTCTGT GAGAGGTACC GGGTCCCTAG GGCAGGCTTG AAGCTGAGGT CAAGACTTAG
  Y
  ATAAGGCTCG CACAGCACCA GCAGTGTCTG GCTAGGGTTG AGACAAAGGT TTGGGGAGAA
  AGAAGCATGA GCATGCATGA GCATACACGC AGAATAACAC GATTTAGATG CAGGTTCCCT
  GACCTCAGTC CCTTCTGGCT GGCCACGTCC ATGTTCTGTG ATCGCTGTAG TGGAAAGTCC
  TATCAGAGGC TAGGAGAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38284537	NES09515683	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	C	C	C		C
ss321249111	CHEV_4_107241568	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28129518					SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38284537	NES09515683	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107426160 () rs orientation: forward

Symbol	Name	Function Class
Glis1	GLIS family zinc finger 1	Intron
Rr597017	regulatory region 597017	619 bp distal
Rr597018	regulatory region 597018	1454 bp proximal