rs28129515 SNP Detail

Summary

• ID
  rs28129515
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107426263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGACAGGT TCCTGGGCTT
  TCTGAGCCTC CCAGTGTTGG CTTCTGTGAG AGGTACCGGG TCCCTAGGGC AGGCTTGAAG
  CTGAGGTCAA GACTTAGCAT AAGGCTCGCA CAGCACCAGC AGTGTCTGGC TAGGGTTGAG
  ACAAAGGTTT GGGGAGAAAG AAGCATGAGC ATGCATGAGC ATACACGCAG AATAACACGA
  K
  TTAGATGCAG GTTCCCTGAC CTCAGTCCCT TCTGGCTGGC CACGTCCATG TTCTGTGATC
  GCTGTAGTGG AAAGTCCTAT CAGAGGCTAG GAGAGGGATC TTAGTCCCTG TACCCACCCT
  CCCAGTCCAG AAGCAGCAGC CTGGGAACAA AGGGCTGGGG CTTGAGTGTG CTATTCAACA
  CAAACAATAC AGACCACCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38284534	NES09515689	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	T	G		T
ss321249113	CHEV_4_107241671	CHEVERUD	SCREENING_POP	f	SNP										G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28129515					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38284534	NES09515689	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107426263 () rs orientation: forward

Symbol	Name	Function Class
Glis1	GLIS family zinc finger 1	Intron
Rr597017	regulatory region 597017	722 bp distal
Rr597018	regulatory region 597018	1351 bp proximal