rs28128167 SNP Detail

Summary

• ID
  rs28128167
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107780753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTGCAGA TACTCGGCGG
  GCCCCGAGAC AGCACTTAAG GGCCGACTAG GGGCTCCCAG GACAAGCGAG GGGCACCGGG
  GCCAGTCACG CAACAGCAGG CGCGGCATCA TCGTCCCGGG CGGCAATGGC GGCTTGAGGA
  CGCGGTGGCT GAGGGAGTTC CCGAGCAAGC AGGCCGCTGC CCTCAGGCCC GGGACACCCG
  Y
  AGAGACTTAA CGTCCAGTTC AACTCCGCCC ACAGGGGCAC TTCCGGGCAC CGATAGGCGG
  TGGCCCCGCC CACACTTGGC CTCTCCCAGA GCCCGCCCAC ATCGTGGCCA CGCCCAAGAG
  GCGGCCACGC CCACCTGGGC CGGAAGCGGT CTCTAAACTA TAGTAAGCCC AGCTTCTTGC
  CCGAAGGTGG CAGGCATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38282687	NES09523256	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs28128167					SNP	T	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38282687	NES09523256	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107780753 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14548	CpG island 14548	within coordinates
Cpt2	carnitine palmitoyltransferase 2	mRNA-UTR
Rr597091	regulatory region 597091	1103 bp distal
Rr597092	regulatory region 597092	within coordinates
Rr597093	regulatory region 597093	46 bp proximal
Tssr42698	transcription start site region 42698	61 bp upstream
Tssr42699	transcription start site region 42699	39 bp upstream
Tssr42700	transcription start site region 42700	within coordinates