rs28128164 SNP Detail

Summary

• ID
  rs28128164
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107781549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAAATAT TATTAAAAAT
  GTATAACTGG AAATTGGGGG TGCATGCCTG TAATCTGAAG GAGAGGCAGA GGCAGAGTGT
  CAAGAATTCT AGCCTATATT CAGCTACATA GCGAGTTGGA AGCCATCCTG GGCTACACGG
  GACTGTGTCT TAATCAAAAC AAGAGGAAGG AAGGAAAAAG AATGTACAGG AACCAGAAAT
  K
  AGCATCCTTT TTCAGATTGA ATATTTCAAA GGAAAAAAAC AAAACAGGTT CCCTACCAAG
  AGGAAACCCT TGTCCTCTAG TTCTGGGTGT CTTTTAGCCT CAGTCCACCG TAGGAGGCTA
  CCTGTCAGCA CACATGGGTC CTGAAGTCCC AAACTTTTCA GGAATTCAAA GATTCTTGAA
  CGTGAACATC CCCATCCATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss38282684	NES09523223	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs28128164					SNP	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38282684	NES09523223	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107781549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14548	CpG island 14548	580 bp distal
Cpt2	carnitine palmitoyltransferase 2	763 bp upstream
Rr597091	regulatory region 597091	1899 bp distal
Rr597092	regulatory region 597092	255 bp distal
Rr597093	regulatory region 597093	729 bp distal
Tssr42698	transcription start site region 42698	857 bp upstream
Tssr42699	transcription start site region 42699	835 bp upstream
Tssr42700	transcription start site region 42700	737 bp upstream