rs28128163 SNP Detail

Summary

• ID
  rs28128163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107781928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGTGAACA TCCCCATCCA
  TCGCTAAACC ACCACAGGCA AGCAACATAT ACCATACCCC TCTGGTCTCT GCCTCATCTG
  TAGCTAAAGA AGTAATAGGT TCTGCTACCA CTTATTTTAC ATAGTGAATT ATTCTCACTT
  GAAGCACAAC AGAATTCCAT TCTGGAAACA CAACCTTCCT TTAGCTCCAG CTGTCTGTCA
  R
  GACCCTGTAG ATCTGAAGCA GCCAAGTACA TTTTGTCTGT TCCATAAGTA GGTAGGCAGA
  GCCATGAGCT GGAACACATC CCAAAGGGCA CTGGATTTGG AGTTCAGGGG ACCTGAGTTT
  GTTTCTCGGG CTCTGTCCTT ATTTAGATGA CCAGCAGTTA AACAGGAAAC TCACTTACCA
  GCTCCATACT GAAGAACTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38282683	NES09523224	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28128163					SNP	G	G	G	G	G	A	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38282683	NES09523224	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107781928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14548	CpG island 14548	959 bp distal
Cpt2	carnitine palmitoyltransferase 2	1142 bp upstream
Rr597092	regulatory region 597092	634 bp distal
Rr597093	regulatory region 597093	1108 bp distal
Tssr42698	transcription start site region 42698	1236 bp upstream
Tssr42699	transcription start site region 42699	1214 bp upstream
Tssr42700	transcription start site region 42700	1116 bp upstream