rs28127920 SNP Detail

Summary

• ID
  rs28127920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107835352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTGAGGT GGAGACGGTG
  CTTCCAGCCA GGGCACCAGT CATCTGCTTC TGTGGCCTCC CTCCAGAACC CTTCCCTGAC
  TCCTCAACCC ACACCAACGA TCGCCTCCTT TTATGCAAGC TTTCAGTCGT TCATGAACTT
  GAGGACTGTT AAAATCAACA GTGACCTCCA CATTGCTAAA TCCAAAGGAG ATTCTGTTCC
  Y
  GATGTGTGCG ATGTTTTCAT GTGAGTCAAA GCTGTCAGTT ACTCATCCTT CTCTCTCCTG
  ATGCCCTTCC ATCCACTGCC TTCAGCCTGC CCTCAGTTCC TTCCCCCCTC CCAGCTTCTC
  GCCTTCTGCT AGGCCTCTGA CTGCTGCTAA GCACTGGGCC TTTCTCCCAG GTGGTTGTGT
  AAGGCCACCT GGTCCTATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38282439	NES09520169	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28127920					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38282439	NES09520169	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107835352 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597103	regulatory region 597103			1313 bp proximal
Slc1a7	solute carrier family 1 (glutamate transporter), member 7			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant