rs28127917 SNP Detail

Summary

• ID
  rs28127917
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107835774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCAGGAA GATCACTGGA
  AATGTCTCCC TTTCAGAGGT TTTGGTTCAT GGTCACTGCG CCTGTGGTGA GGCAGAGCAT
  CATGGTAGGG AGAGTGTGTG GGAAGAGAGT GTGTGGGGAG TGAGTGTAGA ACAGAACTGC
  TTAGCCTGCG GCACCTGAAA AACAAAAGGA AAGGAAGGGG AGAAGCTGTT GTTCTAACAC
  K
  TCCTCCAGAC ACACAGCAGT GACTTGTCCC TAGTCCCAAT AAGTTAAAAA CCTATCAGTG
  AATGAGTTCA GAGCCCCATG ATCTATCTAC TCACTCCCCC AAGACCCCAC ATCTGAACAC
  TGCTGCCCTG GGACCAGACC TTCAACACGC AAGATGGGGG TGGGGGCATA TTTCAAATAA
  AACCTGTAAC CAGCTATAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38282436	NES09520173	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28127917					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38282436	NES09520173	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107835774 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597103	regulatory region 597103			891 bp proximal
Slc1a7	solute carrier family 1 (glutamate transporter), member 7			Intron
				Noncoding-Transcript-Variant