rs28127912 SNP Detail

Summary

• ID
  rs28127912
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107836443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCTCCG TTGTATCTCA
  GCGACTTGAA GTTGCCTCCT TAGAAAGGCC CCCTCCACAG GAGCCCTCCC CACCATGCTG
  CTCTGTCCTG CCCCCCCCCC CCCAGACACT CACGGTTCTT TAACTGTCTC TCTGTACTCA
  CTAGTTACCT TGTCCACTTA TCTCCCAAGG ACTGTAATCT CAGAGCGATC GACTATCACA
  R
  TGCTGTATCA CTATCAGCGC TCCTGAGCAT GGCTGCCGGC TACTCAGCCC TGCGCTGGGG
  ATTGCAGATT CAGAACTTAA GTCTTTGAAC TCAAGTTGCT CCCAGGCTGC AGACAACACT
  GGCCAGGGAA ATGCAGTTCC CTGGAGCTAA GGAAGTGAGA TAGGTTTCCT TCTGGGTGGC
  TTTATGTCCC TTTGCTTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38282431	NES09520053	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss321251886	CHEV_4_107651851	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28127912					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38282431	NES09520053	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107836443 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597103	regulatory region 597103			222 bp proximal
Slc1a7	solute carrier family 1 (glutamate transporter), member 7			Intron
				Noncoding-Transcript-Variant