rs28127901 SNP Detail

Summary

• ID
  rs28127901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107837776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTAGCA TCTGCTCCAG
  GGAAGCAGAG GACACAGCCA GCTCCAGTGA GATACCAAGT CTTACTGTTG GCTCCTGTTT
  CATCTCCAGG ACAACTTGCC ACCTGGAATC ATGCTGATCA CATAGTCATT GCTAAGCACA
  CCACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACGTCC TTGTGTCTTC
  Y
  CACCTCACGC CAGCTCACTC TCCTGTCTGT GAAATCCTCC TGCCTCCTTG TTTGTCGGTT
  GCTATGGGCA ACAACCTGTG TCTTCCTCCT GTCACATTTG TAACCCTGGC CATGTCAGAA
  CCACCAGGTA GGTGAATTTC CAGTCATATC TGACTTGACT TACACCAGGA CCAGAGTGCC
  TTTGTAAAGC CCAGTGGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38282420	NES09520065	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28127901					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38282420	NES09520065	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107837776 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597103	regulatory region 597103			434 bp distal
Slc1a7	solute carrier family 1 (glutamate transporter), member 7			Intron
				Noncoding-Transcript-Variant
Tssr1254	transcription start site region 1254			1108 bp upstream