rs28127898 SNP Detail

Summary

• ID
  rs28127898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:107838354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGGGGC ACGGCACTGA
  GAGTGAGGAT GCTGTGGAGG GCCCCACCAT CTGGGAGGGG ACAGAGTCAG GAGGAAAGTG
  AGGTGAGGCC CTCAAGGCTT GGTTGCCATC CACCCCTCTC AGTTGTTCTT CCACAGTCTT
  TTAACCCTTG AGCCTCCTTT GTCCAGGATC TGCTCCAATC TAGCCCTCAG CCCAGGAGAC
  Y
  GCAGCCTGCC CTTAGCCATC TACGGCTATG GGAATCACAG GGAGGGAGGG GTGCATGAAA
  CTGGGATTCT CCAGGGTTCC AGGAAAAAGC ATGACTTTTG GGGTCACTCT CTAGATGTGT
  GTGCGCCACT TCTCAAGAGT TATTTATTTC AGGTGAGGGG TGAAGTGCAT GCCAATGAGA
  ATGTGGAGAG GTCAGAGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38282417	NES09520068	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28127898					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38282417	NES09520068	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107838354 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597103	regulatory region 597103			1012 bp distal
Slc1a7	solute carrier family 1 (glutamate transporter), member 7			Intron
				Noncoding-Transcript-Variant
Tssr1254	transcription start site region 1254			530 bp upstream