rs28127618 SNP Detail

Summary

• ID
  rs28127618
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109066214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGAGTAC TGGCATGTGG
  CTTAGTATAG ATGATGCAAG GCTTGGAAGT TAGGACACCG TGTACTGCTG GGCACTCCAT
  TTATGTGGAA GTTAATATAA GCTATACCAT GGCAGGGATT GAGGTTAAAC GGAGAAATAT
  GGGGAAGGGT CTCAATATCC ATAAAGAAAT CTGCCAAACG ACAGAGACAA AAGAATCCTG
  R
  GTGACTCTCA AATTTCCTCT GAGACCTAAG CAGAAGACTA AAGAAGCTAG ACTTAATATG
  TAGAAATGAG TTGCGCTTTT GCTTTTATTT TTCAGTGCAA GGGACTGAAC AGGAGGACCC
  TGAACACGCC ATGTGAGTGC TGTGTTACTG AGCTATAGAC ACAGCCCTAG AAATGACTGT
  GGATGCCTGT TATCTAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38278437	NES09518762	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28127618					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38278437	NES09518762	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109066214 () rs orientation: forward

Symbol	Name	Function Class
D4Mit1001	DNA segment, Chr 4, Massachusetts Institute of Technology 1001	1248 bp distal
Gm46867	predicted gene, 46867	518 bp downstream
Rr597288	regulatory region 597288	1800 bp proximal