rs28127604 SNP Detail

Summary

• ID
  rs28127604
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109069791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAAGGCT CACTTGCTCT
  ACAGAGTGGG GTCGGTTTCA GGTTAAATGA AAGATGGCTC CAGCTGAGAC AAGATGGAGG
  ATACTTGGCC CTGTCACAGT GTGTCCTGAA CTATCAGCGT GTACTGTGTC TGGCACTCAT
  CTTATTGATG GTAATTTCTG TATCAAGTGT TCTAGGTTCA GAGTGAAGAA TAACTCAGAC
  W
  TGGTCACTGT CCTCAGGCAG CGTCTGAGTA TCTTAAGAAC TCCTTATAGC AGCTGCTCAA
  AACTGAAACT GTCATCTGGG TGTGGTAGCA CAAAACCTTT GATCTCAGCA CTTAGGAAGC
  AGAAGCATGT GGATCTCTGA GTTTGGTGCC AGCCTGGTCG ATAGCGTGAG GTCCAAAATG
  GCCAGGGCTA TGTAGAGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38278423	NES09518541	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28127604					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38278423	NES09518541	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109069791 () rs orientation: forward

Symbol	Name	Function Class
Rr597288	regulatory region 597288	1380 bp distal