rs28127492 SNP Detail

Summary

• ID
  rs28127492
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108036787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACAAAGA GAAGAGACAG
  GGAATCAGGT GGGCAACAGT GGACCTGGTG CCTGCAGGAC AAGCGGCATT TGAATTGGCA
  CCAGCAAAGG TGAGTTGGAA GGTGTCAGCT TGGAAAATAA AGGGGATACA GAGTCAGCTC
  CTCAGACCTC TGCATACCTA AGTGCCTGCC TCCTCTCCTA GCAAGGTTGC CTAGGGATCA
  Y
  CCTCCACCAA GACCTGAGCT CTGGCTGAGC ATCCTCAGCA CAAGCTTGGT CTGGAGTCAT
  GGAAGCATGG GTTGGGACAC ACACCAGCTA TATTGCTGAT GTGCTGCCAA AGCTTCAAGA
  GTCAGGGCCT TAGAATCAAC ACCATCCTCA CAGCCAACCT TCCTGATCTG CTGAGTAAGC
  AGAGGACCCC AGTGGACTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38281614	NES09510440	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28127492					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38281614	NES09510440	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108036787 () rs orientation: forward

Symbol	Name	Function Class
Echdc2	enoyl Coenzyme A hydratase domain containing 2	282 bp downstream
Rr597140	regulatory region 597140	1089 bp proximal