rs28127491 SNP Detail

Summary

• ID
  rs28127491
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108036828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTGGTGC CTGCAGGACA
  AGCGGCATTT GAATTGGCAC CAGCAAAGGT GAGTTGGAAG GTGTCAGCTT GGAAAATAAA
  GGGGATACAG AGTCAGCTCC TCAGACCTCT GCATACCTAA GTGCCTGCCT CCTCTCCTAG
  CAAGGTTGCC TAGGGATCAC CCTCCACCAA GACCTGAGCT CTGGCTGAGC ATCCTCAGCA
  S
  AAGCTTGGTC TGGAGTCATG GAAGCATGGG TTGGGACACA CACCAGCTAT ATTGCTGATG
  TGCTGCCAAA GCTTCAAGAG TCAGGGCCTT AGAATCAACA CCATCCTCAC AGCCAACCTT
  CCTGATCTGC TGAGTAAGCA GAGGACCCCA GTGGACTATT AGGAAAAACA AACTTGAAGG
  GGTACCCGGT ATAGAAAGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss38281613	NES09510442	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs28127491					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38281613	NES09510442	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108036828 () rs orientation: forward

Symbol	Name	Function Class
Echdc2	enoyl Coenzyme A hydratase domain containing 2	323 bp downstream
Rr597140	regulatory region 597140	1048 bp proximal