rs28127490 SNP Detail

Summary

• ID
  rs28127490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108036883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGTGTC AGCTTGGAAA
  ATAAAGGGGA TACAGAGTCA GCTCCTCAGA CCTCTGCATA CCTAAGTGCC TGCCTCCTCT
  CCTAGCAAGG TTGCCTAGGG ATCACCCTCC ACCAAGACCT GAGCTCTGGC TGAGCATCCT
  CAGCACAAGC TTGGTCTGGA GTCATGGAAG CATGGGTTGG GACACACACC AGCTATATTG
  Y
  TGATGTGCTG CCAAAGCTTC AAGAGTCAGG GCCTTAGAAT CAACACCATC CTCACAGCCA
  ACCTTCCTGA TCTGCTGAGT AAGCAGAGGA CCCCAGTGGA CTATTAGGAA AAACAAACTT
  GAAGGGGTAC CCGGTATAGA AAGATGCTGT TGTGAGATAG AGAAAGAGAC CGACCTTTTG
  GACAGGGATA GTATGAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38281612	NES09510443	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28127490					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38281612	NES09510443	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108036883 () rs orientation: forward

Symbol	Name	Function Class
Echdc2	enoyl Coenzyme A hydratase domain containing 2	378 bp downstream
Rr597140	regulatory region 597140	993 bp proximal