rs28127489 SNP Detail

Summary

• ID
  rs28127489
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108037307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTCAAT AGCAGATCTG
  AATAATAGAT TCACCACCAA AGGATTTAGA TTTAATAAGG CTTAGAAGAT TAGGATTTTA
  GTTGCTGCCC TGAGCCAAGA GATTGGGTTA CTGTCATTTC TGAACTAAGT TTGTATTGTG
  TTTTCCTTCA CATGGCGGTT CATCTGGGTT CAAGAGAGAG AGCTCTAGAT ACATCCCACA
  M
  CGGAGTGCAG GTCATGTTGA TTCATTTATA TGTATATGTC ACAAAAATAG TTAAAATAAG
  GAACCTGTAA ACTTGGGGGG GTGGGGGTGG AGACAAGAGG TGAGGTGTAG GGGAAAGAAA
  AGGGATGAGA TAAATGATGG GATTATATTT TACTTAAATA AAAAAAGTAA AATGTCTTAG
  GAAAAGGGGG GGAGGATATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38281611	NES09510338	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28127489					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38281611	NES09510338	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108037307 () rs orientation: forward

Symbol	Name	Function Class
Echdc2	enoyl Coenzyme A hydratase domain containing 2	802 bp downstream
Rr597140	regulatory region 597140	569 bp proximal
Zyg11a	zyg-11 family member A, cell cycle regulator	1628 bp downstream