rs28127488 SNP Detail

Summary

• ID
  rs28127488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108037324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTGAACTA AGTTTGTATT GTGTTTTCCT TCACATGGCG
  GTTCATCTGG GTTCAAGAGA GAGAGCTCTA GATACATCCC ACACCGGAGT GCAGGTCATG
  Y
  TGATTCATTT ATATGTATAT GTCACAAAAA TAGTTAAAAT AAGGAACCTG TAAACTTGGG
  GGGGTGGGGG TGGAGACAAG AGGTGAGGTG TAGGGGAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38281610	NES09510339	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	C	T	T	C	T	C	C
ss45697908	mCV24670471	ABI	CRAMUS_MOUSE	f	SNP		T					T		C
ss147185919	ENSMUSSNP6481396	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28127488					SNP	T	T	T	T	T	T	T	C	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38281610	NES09510339	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108037324 () rs orientation: forward

Symbol	Name	Function Class
Echdc2	enoyl Coenzyme A hydratase domain containing 2	819 bp downstream
Rr597140	regulatory region 597140	552 bp proximal
Zyg11a	zyg-11 family member A, cell cycle regulator	1611 bp downstream