rs28127487 SNP Detail

Summary

• ID
  rs28127487
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108037419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATGTTGAT TCATTTATAT GTATATGTCA CAAAAATAGT
  TAAAATAAGG AACCTGTAAA CTTGGGGGGG TGGGGGTGGA GACAAGAGGT GAGGTGTAGG
  S
  GAAAGAAAAG GGATGAGATA AATGATGGGA TTATATTTTA CTTAAATAAA AAAAGTAAAA
  TGTCTTAGGA AAAGGGGGGG AGGATATGTT TTGGTGGAT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38281609	NES09510340	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		C	C	G	G	G	C	C
ss45714370	mCV24670470	ABI	CRAMUS_MOUSE	f	SNP		G					G		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28127487					SNP	G	G	G	G	G	G	G	C	C	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38281609	NES09510340	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108037419 () rs orientation: forward

Symbol	Name	Function Class
Echdc2	enoyl Coenzyme A hydratase domain containing 2	914 bp downstream
Rr597140	regulatory region 597140	457 bp proximal
Zyg11a	zyg-11 family member A, cell cycle regulator	1516 bp downstream