rs28127485 SNP Detail

Summary

• ID
  rs28127485
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108037686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAAGGG GGGGAGGATA
  TGTTTTGGTG GATATGTTTG GTATCAGAGG AAGGTTTGGG GGAAGGAGGT GCCTCTGTGG
  ACCCATGCTG GCATCCCTTC CCCCTGAGGT ACCAGGTATA GTATAGAATA CATTTAGGGT
  ATGGCTAGGG GAGTAGCAGA GAGAGAGACC AGCCATGAGC ATAAGGCTGG CTTACCTTCA
  K
  CTCCTTCTCA TTGCTGGGAC TGTAGTCTAG AATGTGGCTT AGGATAGCTA AGGATGAGTT
  TCTTCCTCAG CTGATGCTCA AGTGAGTGAG TGAGTGAGTG ACAGGGCTCG CTTGCTGCTC
  TTGAGCAGAG GACCCAAGCT TGGCTCCCAG CTGACACCTG CCTGTAACCC TTGCTCCAAA
  TTCAATACTC TTTTGCCCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38281607	NES09510295	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28127485					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38281607	NES09510295	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108037686 () rs orientation: forward

Symbol	Name	Function Class
Echdc2	enoyl Coenzyme A hydratase domain containing 2	1181 bp downstream
Rr597140	regulatory region 597140	190 bp proximal
Zyg11a	zyg-11 family member A, cell cycle regulator	mRNA-UTR