rs28127483 SNP Detail

Summary

• ID
  rs28127483
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108038170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAAACTC TAACATCCAG
  GGCCTGCAGA GATGGCTCAG CAGTTAAGAT CATCTGCTGC TCTTCCAGAG GACTGGGGTT
  TGGTTCCCAA CACCCATGTG GTGGCCCCAG TTCCAGTCCT GACCTTAGTG GACACCAGGC
  TCAAACATGC AAAACTCTCT CTCTCTCTCT CTCTCTCACA CACACACACA CACACGCACA
  S
  AGGAATTTGC TATTTACTTC CATTCTTCAA AACTTGACTG AGTGAAAACT ACTTCTCAAC
  AGGGAAAGGA AGGCGTCCAC ACTCTGTTCC AGTTTTGCAG GACAGACTGG ATGGTGTTCA
  CTACTGCCAG GGATGGTTCT CATAAAACCA CCCGCTTTGT GTCCACATCA GGAAAAGCAT
  GCACTGAAAT GTTCTGCAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38281605	NES09510266	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28127483					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38281605	NES09510266	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108038170 () rs orientation: forward

Symbol	Name	Function Class
Echdc2	enoyl Coenzyme A hydratase domain containing 2	1665 bp downstream
Rr597140	regulatory region 597140	273 bp distal
Zyg11a	zyg-11 family member A, cell cycle regulator	mRNA-UTR