rs28127481 SNP Detail

Summary

• ID
  rs28127481
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108038269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CACAAAACTC TAACATCCAG GGCCTGCAGA GATGGCTCAG CAGTTAAGAT CATCTGCTGC
  TCTTCCAGAG GACTGGGGTT TGGTTCCCAA CACCCATGTG GTGGCCCCAG TTCCAGTCCT
  GACCTTAGTG GACACCAGGC TCAAACATGC AACTCTCTCT CTCTCTCTCT CTCTCACACA
  CACACACACA CCACACGCAC AGAGGAATTT GCTATTTACT TCCATTCTTC AAAACTTGAC
  TGAGTGAAAA CTACTTCTCA ACAGGGAAAG GAAGGCGTCC ACACTCTGTT CCAGTTTTGC
  R
  GGACAGACTG GATGGTGTTC ACTACTGCCA GGGATGGTTC TCATAAAACC ACCCGCTTTG
  TGTCCACATC AGGAAAAGCA TGCACTGAAA TGTTCTGCAG TCTTTTTCTC TCAGCTTTGG
  TCAGAGCTTT TCCAAAGTGA GAATTTCCAA TGTATTCTAA CTTCAGTCCA GGCCTGCGCT
  TCAACCCCAC ACATTCACAC ACTCAATGAT CTGATTCCTC AAATTGGAGG GAAAAGAACA
  TTAAAGGCGC CAGGGTGTGG CAGCTCATGC TGGAAGCCCC AGCATTGAAA CAGCAGGATT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38281603	NES09510268	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	G		A	A	G	A	G	A	G	A
ss45721366	mCV24670176	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		A
ss147185955	ENSMUSSNP6560084	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28127481					SNP	G	G	G	A	G	A	G	A	A	A	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38281603	NES09510268	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108038269 () rs orientation: forward

Symbol	Name	Function Class
Echdc2	enoyl Coenzyme A hydratase domain containing 2	1764 bp downstream
Rr597140	regulatory region 597140	372 bp distal
Zyg11a	zyg-11 family member A, cell cycle regulator	mRNA-UTR