rs28126425 SNP Detail

Summary

• ID
  rs28126425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95679778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACGTACAAG GGAAACCCGG AAACACAATT TGAAAGGATC
  CACAGTTTGC CAGTCACAAG TAAGTAGATG TATGTCAGAA ACATGCTGTA ATAACTGACT
  R
  TGTATGTGGC TAGGAAATAG GCATGTAATC TCCCTCTGTT GCCATCTTCT GATCAGCCCC
  AGCTGGGAGG CCACCCCAGG CATGCTTCCT CCCTAACCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38254050	NES09556510	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	G	A	A		A	G	G	A		G
ss45575059	mCV23460793	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		G
ss147066684	ENSMUSSNP5798273	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								G
ss321215725	CHEV_4_95458232	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28126425					SNP	G	G	G	G	G	G	G	A	G	G	A	A	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38254050	NES09556510	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95679778 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595472	regulatory region 595472			1975 bp proximal