rs28126408 SNP Detail

Summary

• ID
  rs28126408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95681172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGTCCTG AACTTGTATA
  GCAATTTAAT TTACAACATG GCTTAATACA TTACTTTTAA AAGGTATTTG TAGATTTATG
  CACATGTTAT GGTATAACAA CCTACAAAGT AAGAAATGCT GAGTAAAGGC AAGATGGAGG
  CAAGAATGTT CCATGAGTTA TTACAGAGGG AGTCAATGTT CAAAGATGGT ACAACAAAGG
  Y
  GATAATATTG AGCTGAGTCT TTCTTTCTTA TTGACTATAT GTGGGTGTTG TTATGAGCAT
  TGGAGGAAAG GTACAAGCCA AGTAGAGAAG AGAGTCTCAG ATCCTCCTAG CTGGACTGAT
  GGGTGGGTTT GAGCCACTCC ATCTGTGTTC TAGGAACTAA ACTGGGGTCC TTCAAAGGAG
  AAGGAATTGT TCCTAAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38254033	NES09556527	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28126408					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38254033	NES09556527	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95681172 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595472	regulatory region 595472			581 bp proximal