rs28126407 SNP Detail

Summary

• ID
  rs28126407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95681487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATGGGT GGGTTTGAGC
  CACTCCATCT GTGTTCTAGG AACTAAACTG GGGTCCTTCA AAGGAGAAGG AATTGTTCCT
  AAGCTCTGAG CCATCTCCAA AGTTTTTGAG CCAAATCTCA GGAGGATATA TAACTTTTTT
  TTTTGTCTGA GGGGAAATTA TGAAGAAGCA GAGATGAAAA AGAAAATGGC TCACTTTGGG
  R
  AATTTCAATT TTTCAATAAA TCTAGGGCTT AGTCTGTGAA AGACTTGATA GGGAGGAGAA
  TCAGGAAACA ATAATCTTGT GATTAAGTCA AACAAATAAG GAAAAGCCAA ATTAGAGAGT
  ATGTCATCTG TCAGGGATCA ATATTAATAA TAATACAATT GAGTTTTTGT TTTAGAAAGG
  TCATTTGCTG GACATACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38254032	NES09556354	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28126407					SNP	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38254032	NES09556354	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95681487 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595472	regulatory region 595472			266 bp proximal