rs28126397 SNP Detail

Summary

• ID
  rs28126397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95682176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTAGTGA GAGACTCAGG
  AGTGGGGTCT GAGTCTGAGG TAAACATGTG GCACTCTACG ACACACACAT TGTCCCTGCA
  CTCGCTGGAG TAGATGAGCC CAGGGAGAGG GAGGTAATAA AAGGTGTAGG AGAGATCACA
  GGGAGGGGGA AGGGTTTCCT AAGGAGACAG ACTAATAACG GGCCTGCGGC CATGTGAGAA
  Y
  TCTAAGCTTC CCACTATCTC AAGAAGGGGT AGAATTAAAC CACCTGCTGC TTCACAGTTT
  GTTTAGGAGC CTAGTGTATC ACAGTGTCTT TGTCCACACT GTGCCGTGCC ATGCAGATCT
  TGGACTTTGT TCTGGTTGAT GATTAGTCGC ATTTATGGGT CAGGAAACTA AGCCTCAGAG
  AGACACAGAA TCACATGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38254022	NES09556365	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28126397					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38254022	NES09556365	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95682176 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595472	regulatory region 595472			within coordinates