rs28126066 SNP Detail

Summary

• ID
  rs28126066
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:90060235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGCTTGG TTAAAATATA
  TATATCAGCT CTGCCATCTC AGCAGATGCA TAAACTTGTG AACTTCAATT TTTCCATTTC
  TTTCTCTTTA TTGTTTGTGA TAGGATCTCA TTATATAACC CAGGACTGAC TAAGACTTGT
  GATCTTCTTG CCTCTCAGTC TCTTGAGTGC TGAGATTATA GGCATGAGCC ATTTCCTGCA
  K
  TTCAGCAGTC TTAATTCAGT TTTATTTTCC CTATGATAGA GTCTGATGTT ATCCAACAAT
  TATTTGACTG TGGCATTTAA AACAACCTAG TCTTTGAACA ATGGTTTGCT TGTTTATTTT
  AGAAACCTGG TCTCAGTCTG TTACCCTGGT AGATTAGCAC TCACTGGTAG CCTCGGCTGG
  CATTGAACTG CAGTAAATCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38272688	NES09562393	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	T	G	T	G	T	T	G		G	G	T	G		T
ss146955477	ENSMUSSNP1007356	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						T
ss321206784	CHEV_4_89838689	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28126066					SNP	G	G	T	G	T	G	T	G	T	T	G	G	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38272688	NES09562393	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:90060235 () rs orientation: forward

Symbol	Name	Function Class
Rr595232	regulatory region 595232	782 bp distal
Rr595233	regulatory region 595233	917 bp distal