rs28125698 SNP Detail

Summary

• ID
  rs28125698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89368281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTCCTC CCCCTCCTCC
  TCCTCCTCCT TCTTCTTCCT TTTATTTTTG AAGTACCTGG TTCATAGGTG TAGAGAGTTT
  ACAAAGGCAA TTTCCCTTTA AACTTGGAAA TCCAGAAATT TCTGGCCCTC TCTCACAGTT
  GAGTAATGTG GACTTACATG TCAGCAACAA TTTCTGTAAT GTGTCTGAAG ACTATCCCGT
  Y
  TTGTTTCTAG TCTTGCTGTG GAAAGATCCC TGATAAAATC CTGTATAATC CTGTACGATT
  TTATTCGTCG TTGGAAAAAC CCTTTGTTCT TTAGCCCCAA CTTTCTAACA TTTCAAATTC
  TGTGCCGTGA TAAAGATCTG ATGTTAAAGT TCCTGACTAC TATGTCAAAA ATGTCCACAG
  ATATGTATTA ATCTTTAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38274618	NES09576308	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28125698					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38274618	NES09576308	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89368281 () rs orientation: forward

Symbol	Name	Function Class
Gm12610	predicted gene 12610	within coordinates
Gm54238	predicted gene, 54238	within coordinates
Rr595207	regulatory region 595207	858 bp distal