rs28125650 SNP Detail

Summary

• ID
  rs28125650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89387198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATATTCTG CACTTTTTTG
  GCTAATATCC ACTTATTAGT GAGTACATAC CATGTATGTA ATTTTTGGTG AGTTACCTCA
  CTTGGTTTGA TATTTTCTAC TTCCATCCAT TTGCCTGCAA AACTCATGAT GTCCTCATTC
  TTAGTAGCTG AACAGTGTTC CACTTCATGG TAAGGAGTGG ATGCCCCACC ATCTAGGTAA
  Y
  TGAATTGTAA TAGTGAAAGC AGCATAGATA TCCAACATTG ATAGGTCTGT GCTGCAGACC
  CATACTGCAG CAATATTGTG CAGCCTGTAG ACCTCGAAGA ATACGTAATA ACAATATTTA
  TGAAGAAATA TCAAGTGGTA GAATAAATAA AAATGAATAC ATATTGTGGT CTGAAAATTA
  AAATACAAAG AGGATTATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38274570	NES09575717	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28125650					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38274570	NES09575717	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89387198 () rs orientation: forward

Symbol	Name	Function Class
Gm12610	predicted gene 12610	within coordinates
Rr595210	regulatory region 595210	1352 bp proximal