rs28125647 SNP Detail

Summary

• ID
  rs28125647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89387857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTATATACT TTCTATCTCT
  AAAAAATATG TTAATTTTAT TCAGTCATTC TTACTTTAAA ATTATATATA ATTACACATA
  ATTATATGTA ATTATATACA GTTACACACA CATATGAGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTATGTG TGTAATACTC ATGTGGTCTT GAGGTAGAAG GGTATATCCA
  Y
  CCTGATGGTT GTAATTTCCA GGGTCTCTGT CTTCTTACCT TTCTATTGCT TTTGCTTCTG
  TAATTTGACA GTTTACTGCT CTGGCTTAGC AGTTAGGTAT TGCTTGGGGA AGAGTAAGAA
  CATAGTGGCC TAAACTTTTG AAATGATGCT GATGGTGGAA GGATTTTTGG ATGGGTTTAG
  ATAGGATGAT AATCTACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38274567	NES09575721	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28125647					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38274567	NES09575721	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89387857 () rs orientation: forward

Symbol	Name	Function Class
Gm12610	predicted gene 12610	within coordinates
Rr595210	regulatory region 595210	693 bp proximal