rs28125639 SNP Detail

Summary

• ID
  rs28125639
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89388635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCCAGTT GGTCAGAGTT
  GATTTTGTAA GCCTACAGAA TTCAGAGCCT GCTTTTTCAA AAATTTTATT TTATTTTTTA
  TTTTTTTGCG TTTTTGCTTT TTTTTTTTTG CTTTAGGGAT ACGATCAATA AAGAAGTCTC
  CTGTCCTTAT CTGCTTCACA CTGTAAAATG AGACCCAAGG TGGCTAAGAC ATTTTATAGC
  Y
  CCGTGGAAAT CCATCCTGAT AAAGAAAGCA CCCTTCTTGG AACTCCCCTC CCTGCCCCAA
  CTATTATCAC ACAGTGCTTT ATTGACAGCT TTGTGATAAG AACTAATGCC TATTTAACTT
  CCTTATTTAC ATTATAGAAA AAACTACTAA TTGCTGTCTT GTTTATTCAC TAAAATTTGC
  CACTTTTAAA AAGTGAATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38274559	NES09575655	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28125639					SNP	T	T	T	C	T	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38274559	NES09575655	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89388635 () rs orientation: forward

Symbol	Name	Function Class
Gm12610	predicted gene 12610	within coordinates
Rr595210	regulatory region 595210	within coordinates