rs28120018 SNP Detail

Summary

• ID
  rs28120018
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:96448322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTAATATC CTTTTGGGGA
  TTCTTATCAT GAGGTTTAGT TTGAAGCAGA AGCAAAGACA TAGGCATAAC TAAGTAGGCC
  TGATGAAGGC ATAGCCATAC CTGTCACAAT GGTGATCATT GTCTCAGCTC CAGTCTTTTC
  AGTAAGGTTT TGTGACAAGT TGTCAGAACT GTGAAATATC TTTCTGAATG ACAAATTGTT
  S
  TTTTGTCTGG CATAAGGATT CAGAATTCTT CTTCAATCAG AAAGAGATTC CAGGCGAAAC
  TCCAATTCCT TTATAAACCA TTGTTCTAAT AATTTAATAA TCAATGGGGG GGGTGGTGAG
  GGTAGAGGTT AATGCATGTG CCTCTTTAAA ATATGTTAAT TTCTGCCAAC ATCTTTATAG
  AGCTTTTTAA CACTTTTGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38251249	NES09547033	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28120018					SNP	C	C	C	C	C	C	G	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38251249	NES09547033	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:96448322 () rs orientation: forward

Symbol	Name	Function Class
Gm69146	predicted gene, 69146	within coordinates
Rr595513	regulatory region 595513	319 bp proximal