rs28119822 SNP Detail

Summary

• ID
  rs28119822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:96530121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATTTCAT GCAGTACTTT
  TCTAGACTTT AGCCCATGGC CAGTGTTTAA TCTATAGGGC TTCCAGAGGA AACATGTGAC
  ACTTTAAACA CATGGCTACT GTTCTGACTC TACCCTCCAT TTCATTTCCA CTGAAGGTTC
  TAAGTTGTTC CTTGAGTACC CATTCCCTTC TTTCTGCCAG TGTTATTCTG TGTGATTTAA
  Y
  ATCCTTTGTG CTTGAATCAT TTGAAGAATG TACATTTGTT GCAGAGTGTA CATTTACAGC
  TATAACTCAT TGTGCCCAGA AGGCACTCCC GTGGGATCCA TATAAACCTT GGCCGTTTTC
  ATGAAGGCTC TTTTAAGTGC TCCCTTCTTG GAATACTGTC TTCCTGATGA TCCTCCAAGT
  GACAGCTGTC TTTTCACCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38251053	NES09543794	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	T		C	T	T	C		C
ss321216746	CHEV_4_96308575	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28119822					SNP	T	T	T	T	C	T	C	T	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38251053	NES09543794	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:96530121 () rs orientation: forward

Symbol	Name	Function Class
Cyp2j5	cytochrome P450, family 2, subfamily j, polypeptide 5	Intron
Tssr42487	transcription start site region 42487	845 bp downstream