rs28119792 SNP Detail

Summary

• ID
  rs28119792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:96570664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTAACTA TCCAGTCTGC
  TTCCCTCTCA GGTTTTCTTT TCAGGGGTGA GAACTCCATT CCTCTGATCC TGGGGCTGAA
  ACGTCTGATG TGTGTTGCTT AGTTCCTAAA CTTAAATGTG AATTACCAAA TACAACTGAA
  TCTAACCTCA AAATAGATTG ATCTTCCAGC CTCTTCACAC CATCTCCGCT GCTAAAGCCC
  Y
  CAGCTCTTCC TGTGCTTATC CTGTGGACAT TCATGCCTAT TCTTCCTGGA GTACCTCATT
  ATAAACAAAA TCAGATTGTA TCAGAGAGCT ATTCAAACAG CTGTCTACCA GTTTCTCCTA
  AAGGTTTCAC CATATCCAGA ATGGCCCCTA TGATTTGGGC TTTGTAATCC CCCAGACCTT
  TGTAATCACT ACATCCTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38251023	NES09542692	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28119792					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38251023	NES09542692	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:96570664 () rs orientation: forward

Symbol	Name	Function Class
Rr595520	regulatory region 595520	1967 bp distal
Rr595521	regulatory region 595521	1129 bp proximal
Rr595522	regulatory region 595522	1253 bp proximal