rs28119791 SNP Detail

Summary

• ID
  rs28119791
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:96571081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCCCTCA GTGAGGCAGC
  AGGCATATGC CAGTCTCATA ATTCCTTCCC CACTTGCAGC CTCAGTAGCT AGGTGGCTTT
  ATACACATGT CCTTAGAAGC TTTGCTCAAA AACCAGCTCA ACTGGGTTTC TTCAGTCACT
  TGCACAAACC TCACCCCTCT CCTTTCAGCA GTTTCACGCA GCCCAGATCA CATCTGGATC
  K
  ATTCTACTTC CCACTAGAAA CTTAACTCCT CAAGGACAAT TTTCAGCCTG CTGGGGTCTT
  GGTGATATTG CTAGTGATTA GACACAGTAA ACACTCAAGA GTTGTTTTTT GCTGACTAAG
  TCCATAGATT TAAAAAATAT ATTCATACTC TGAAGTAAAT ACCCAAAAAT CAAAAGAGTG
  CATCAAAGAT TTTAGAAGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38251022	NES09542693	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28119791					SNP	T	T	T	T	T	T	G	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38251022	NES09542693	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:96571081 () rs orientation: forward

Symbol	Name	Function Class
Rr595521	regulatory region 595521	712 bp proximal
Rr595522	regulatory region 595522	836 bp proximal