rs28114932 SNP Detail

Summary

• ID
  rs28114932
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95784758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACCCTGA GAAGGAGCCC
  CACAGACTTG CTGAACTAGG AGTCAGACTT TGTAGAAAGT GATTTTCTTC AGCTTCCTCC
  TGTTCCACGA AAGGCATGTC ACTGTTAATT CATGTCAGCT CAGAAGGCCC AGCCTTAGAT
  ACTTTCTTTG AGTGGGCAAA ATGTCGCCAG TGCTGAGCAA TGGAGCAAGT CATTTTCTCA
  R
  CTGTGAAGAT GAGTCAGGCA GGGCTCAAAG GGTCCTAAGG AGCCCAGCAT CCAGTGATCC
  TCATCCATTA TCCCATGCCA CACTTGGACT GTGCCGTCAT TGTTCGCTTC TCAGAGAGAG
  CTGAGCCCCC AAAGTAGTAA GATAAAAATC AGAGCTGCTT TGCAAATGCC CACAAAGCCA
  CTGGGGGGAG GTTTCCTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38253261	NES09551558	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	A	A		A	A	A	G		A	G	A	A		G
ss45708426	mCV22849050	ABI	CRAMUS_MOUSE	f	SNP	G	G						A		A
ss147068290	ENSMUSSNP6319727	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss321216045	CHEV_4_95563212	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28114932					SNP	G	G	A	G	A	A	A	A	A	A	A	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38253261	NES09551558	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95784758 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr595485	regulatory region 595485			982 bp distal
Rr595486	regulatory region 595486			within coordinates
Rr595487	regulatory region 595487			787 bp proximal
Rr595488	regulatory region 595488			810 bp proximal
Rr595489	regulatory region 595489			943 bp proximal